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Trigo, J. P., Steinhagen, S., Stedt, K., Krona, A., Verhagen, S., Pavia, H., . . . Undeland, I. (2025). A new method for protein extraction from sea lettuce (Ulva fenestrata) via surfactants and alkaline aqueous solutions. Food Chemistry, 464, Article ID 141839.
Open this publication in new window or tab >>A new method for protein extraction from sea lettuce (Ulva fenestrata) via surfactants and alkaline aqueous solutions
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2025 (English)In: Food Chemistry, ISSN 0308-8146, E-ISSN 1873-7072, Vol. 464, article id 141839Article in journal (Refereed) Published
Abstract [en]

Alternative protein sources such as seaweed can help relieve the pressure on land-based protein supply. This proof-of-concept study developed an extraction method to recover soluble and lipophilic proteins from the seaweed Ulva fenestrata. The method consisted of processing U. fenestrata with 0.1–0.5 % aqueous Triton X-114 solution and reprocessing the pellet with an alkaline aqueous solution. Then, the solubilized proteins were precipitated via acidification. The new method extracted 3.4-times more protein, measured as total amino acids, compared to the control with two alkaline aqueous extraction cycles. Triton disrupted the chloroplasts and likely solubilized lipophilic membrane proteins as supported by microstructure and polypeptide pattern analysis. Triton-derived protein extracts contained lipids inside the precipitates/aggregates and were richer in fatty acids typical of photosynthetic membranes. The higher extraction yields are proposed to result from membrane charge neutralization upon acidification, triggering interactions between the membrane lipids and their subsequent precipitation with the lipophilic membrane protein. 

Place, publisher, year, edition, pages
Elsevier Ltd, 2025
Keywords
Plant Proteins; Surface-Active Agents; Ulva; Photosynthetic membranes; Seaweed; chlorophyll; essential amino acid; membrane protein; nitrogen; polypeptide; protein aggregate; triton x 114; plant protein; surfactant; Alkalines; Food proteins; Lipophilic membrane; Macro algae; Macro-algae; Membrane proteins; Protein extraction; Sea lettuce; Sustainable food protein; Thylakoid membrane proteins; acidification; alkalinity; amino acid analysis; aqueous solution; Article; biomass; chloroplast; chloroplast membrane; combustion; concentration (parameter); confocal laser scanning microscopy; controlled study; critical micelle concentration; elemental analysis; extraction; lipid bilayer; lipophilicity; molecular weight; nonhuman; photosynthesis; polyacrylamide gel electrophoresis; precipitation; proof of concept; protein analysis; protein cross linking; protein determination; protein isolation; protein structure; scale up; seaweed; solubility; solubilization; supernatant; Ulva; Ulva fenestrata; water solubility; chemistry; isolation and purification; Nafion membranes
National Category
Chemical Sciences
Identifiers
urn:nbn:se:ri:diva-78029 (URN)10.1016/j.foodchem.2024.141839 (DOI)2-s2.0-85208558133 (Scopus ID)
Note

The study was supported by Formas and conducted within the projects ‘CirkAlg’ (Grant no. 2018-01839) and ‘A manual for the use ofsustainable marine resources’ (Grant no. 2022–00331).

Available from: 2025-04-08 Created: 2025-04-08 Last updated: 2025-09-23Bibliographically approved
Eliasdottir, H. G., Ebube, P. E., Krona, A., Wijayarathna, E. K., Zamani, A. & Abdollahi, M. (2025). Targeting aleurone cells for enhanced protein recovery from wheat bran: Impact on protein functionality and phytate content. Journal of Cereal Science, 124, Article ID 104205.
Open this publication in new window or tab >>Targeting aleurone cells for enhanced protein recovery from wheat bran: Impact on protein functionality and phytate content
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2025 (English)In: Journal of Cereal Science, ISSN 0733-5210, E-ISSN 1095-9963, Vol. 124, article id 104205Article in journal (Refereed) Published
Abstract [en]

Protein extraction from wheat bran is challenging due to its multi-layer and fiber-rich structure. Here, opening aleurone cells, via dry and wet milling, their combination and a novel ultrafine milling, and its effect on wheat bran’s protein recovery using the alkaline solubilization/isoelectric precipitation and protein structure, functionality, and phytate content were investigated. Wet milling and ultrafine milling improved protein recovery and purity but only ultrafine milling reduced bran particle size to the aleurone cells and exposed their structure. Despite this, ultrafine milling did not significantly increase protein yield compared to wet milling, which partially opened the aleurone cells, meaning that opening the cells per se is not enough for extracting their protein. Proteins extracted with the aid of ultrafine milling had smaller particle sizes with significantly better water solubility (>2-fold) and rheological properties. Both wet milling and ultrafine milling significantly improved the removal of phytate during the wet fractionation process. Altogether, optimizing milling techniques offers a promising path to enhance accessibility to wheat bran proteins and their quality if carefully fine-tuned but other assistant technologies are necessary for boosting the recovery of the released protein from aleurone cells. 

Place, publisher, year, edition, pages
Academic Press, 2025
National Category
Food Science
Identifiers
urn:nbn:se:ri:diva-78590 (URN)10.1016/j.jcs.2025.104205 (DOI)2-s2.0-105005871962 (Scopus ID)
Note

We are grateful to FORMAS for the research grant within the 3DMix project (grant number: 2021-02349)

Available from: 2025-06-13 Created: 2025-06-13 Last updated: 2025-09-23Bibliographically approved
Karlsson, J., Lopez-Sanchez, P., Marques, T. M., Hyötyläinen, T., Castro-Alves, V., Krona, A. & Ström, A. (2024). Effect of heating of pea fibres on their swelling, rheological properties and in vitro colon fermentation. Food Hydrocolloids, 147, Article ID 109306.
Open this publication in new window or tab >>Effect of heating of pea fibres on their swelling, rheological properties and in vitro colon fermentation
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2024 (English)In: Food Hydrocolloids, ISSN 0268-005X, E-ISSN 1873-7137, Vol. 147, article id 109306Article in journal (Refereed) Published
Abstract [en]

Dietary fibre intake is essential for all human beings and has been correlated to beneficial health effects. Pea hull fibres (PF) are generally seen as a side stream during extraction of protein and starch from yellow pea but could be used in various food products to boost fibre content. In this study, the thermal treatment of pea hull fibres was investigated in terms of physicochemical properties and in vitro colonic fermentation. The PF that was subjected to heating showed an increase of fibres solubilised in the liquid and particle size. Results also showed that viscosity and storage modulus increased with thermal treatment, possibly due to the swelling of the PF. The pea fibre was readily fermentable based on total gas production and pH. However, the susceptibility to fermentation of PF did not increase with thermal treatment. Total gas production and short chain fatty acid produced were similar independent of thermal treatment. Conclusively, heating of the PF resulted in increased ability to structure water suspension, owing to increased fibre particle size, but is not sufficient to increase short chain fatty acid production during colonic fermentation. To explain this, we propose that the changes in cell wall structure were not major enough to induce higher fermentability. 

Place, publisher, year, edition, pages
Elsevier B.V., 2024
Keywords
Fatty acids; Fibers; Food products; Heat treatment; Particle size; Physicochemical properties; Rheology; Suspensions (fluids); Thermal processing (foods); Dietary fibre; Gas productions; Health effects; Human being; In vitro colonic fermentation; In-vitro; Particles sizes; Pea hull fiber; Rheological property; Shorter chains; Fermentation
National Category
Food Science
Identifiers
urn:nbn:se:ri:diva-67701 (URN)10.1016/j.foodhyd.2023.109306 (DOI)2-s2.0-85172414777 (Scopus ID)
Funder
Swedish Research Council Formas, 2020-02843
Note

The study was performed within the PANSweden consortium, which acknowledge financial support from the Swedish research council, FORMAS grant number 2020-02843. We acknowledge Orkla for providing fiber samples.

Available from: 2023-11-06 Created: 2023-11-06 Last updated: 2025-09-23Bibliographically approved
Karlsson, J., Lopez-Sanchez, P., Marques, T., Hyötyläinen, T., Castro-Alves, V., Krona, A. & Ström, A. (2024). Physico-chemical properties of pea fibre and pea protein blends and the implications for in vitro batch fermentation using human inoculum. Food Hydrocolloids, 150, Article ID 109732.
Open this publication in new window or tab >>Physico-chemical properties of pea fibre and pea protein blends and the implications for in vitro batch fermentation using human inoculum
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2024 (English)In: Food Hydrocolloids, ISSN 0268-005X, E-ISSN 1873-7137, Vol. 150, article id 109732Article in journal (Refereed) Published
Abstract [en]

The incorporation of fibre into pea protein matrices influences their microstructure, yet our understanding of their gut fermentability remains unexplored. In this study, dietary fibres and protein from yellow pea were investigated for their physico-chemical properties and impact on in vitro colonic fermentation using human inoculum. Pea fibre and pea protein blends were studied at different pH and after thermal treatment at 95 °C for 30 min with oscillatory rheology, static light scattering and confocal laser scanning microscopy. The effect on in vitro colonic fermentation was evaluated measuring gas production, ammonia, and short chain fatty acid (SCFA) production. Rheology indicated that during thermal treatment a firmer gel is formed close to the protein isoelectric point with a structure characterised by aggregation, but less particle swelling compared to other pH. Addition of fibre led to higher storage modulus (G′), with the fibre dominating the rheological properties. Fermentation of samples containing protein led to higher levels of ammonia and SCFA compared to only fibres. Blends produced higher amounts of valerate, i-valerate and caproate, and lower amounts of ammonia. Reduced fermentation of proteins in the presence of fibres was also reflected in a more intact microstructure of the protein particles in the digesta. Although thermal treatment of blends caused particle swelling and induced gelation, only small differences could be discerned in the in vitro colonic fermentation outcomes. Our results highlight that potentially harmful fermentation products from protein, such as ammonia, were reduced in the presence of pea hull fibre. 

Place, publisher, year, edition, pages
Elsevier B.V., 2024
Keywords
In vitro human colonic fermentation, Microstructure, Pea hull fibre, Pea protein, Rheology, Yellow pea, Ammonia, Chemical properties, Elasticity, Fatty acids, Fermentation, Fibers, Gelation, Heat treatment, Light scattering, Proteins, Batch fermentation, Fiber protein, In-vitro, Inocula, Pea hull fiber, Pea proteins, Physicochemical property, Shorter chains
National Category
Food Science
Identifiers
urn:nbn:se:ri:diva-71907 (URN)10.1016/j.foodhyd.2024.109732 (DOI)2-s2.0-85181936389 (Scopus ID)
Funder
Swedish Research Council Formas, 2020-02843
Note

The study was performed within the PANSweden project which acknowledge financial support from the Swedish research council, FORMAS grant number 2020-02843. We acknowledge Orkla for providing fibre samples and Lantmannen ¨ for providing protein samples

Available from: 2024-02-22 Created: 2024-02-22 Last updated: 2025-09-23Bibliographically approved
Ghirmai, S., Krona, A., Wu, H., Whalin, J., Axelsson, M. & Undeland, I. (2024). Relationship between hemolysis and lipid oxidation in red blood cell-spiked fish muscle; dependance on pH and blood plasma. Scientific Reports, 14(1), Article ID 1943.
Open this publication in new window or tab >>Relationship between hemolysis and lipid oxidation in red blood cell-spiked fish muscle; dependance on pH and blood plasma
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2024 (English)In: Scientific Reports, E-ISSN 2045-2322, Vol. 14, no 1, article id 1943Article in journal (Refereed) Published
Abstract [en]

The relationship between hemolysis and lipid oxidation was explored in red blood cell (RBCs)-spiked washed cod mince (WCM). At pH 6.8 and 3 ± 1 °C, intact RBCs (71 µM Hb) delayed lipid oxidation by 1 day compared to WCM with partly or fully lysed RBCs which oxidized immediately. Intact RBCs also lowered peak peroxide value (PV) and thiobarbituric acid reactive substances (TBARS) with up to 59.5% and 48.1%, respectively. Adding 3% (v/w) blood plasma to RBC-spiked WCM delayed the lipid oxidation onset from 1 to 3–4 days without delaying hemolysis. At pH 6.4 the oxidation onset in RBC-WCM was the same as for pH 6.8 while at pH 7.2–7.6 lipid oxidation was suppressed for 7 days. Micrographs revealed RBC-lysis from day 2 at pH 6.4 but at pH 7.6, RBC stayed intact for ≥ 7 days. Thus, assuring presence of plasma-derived antioxidants and/or elevating muscle pH to avoid hemolysis can aid valorization of blood rich underutilized fish raw materials. 

Place, publisher, year, edition, pages
Nature Research, 2024
Keywords
Animals, Erythrocytes, Fishes, Hemolysis, Hydrogen-Ion Concentration, Lipids, Muscles, Plasma, lipid, animal, erythrocyte, fish, muscle, pH
National Category
Health Sciences
Identifiers
urn:nbn:se:ri:diva-71919 (URN)10.1038/s41598-024-52090-8 (DOI)2-s2.0-85182866645 (Scopus ID)
Funder
Swedish Research Council Formas, 2016-01181EU, Horizon 2020Region Västra Götaland, 837726, RUN 2019-00345
Note

This work was supported by the Swedish research council for sustainable development (FORMAS) Grant no. 2016-01181. This project has also received funding from Region Västra Götaland (project RUN 2019-00345) and the Bio Based Industries Joint Undertaking (JU) under grant agreement (No 837726). The JU receives support from the European Union’s Horizon 2020 research and innovation programme and the Bio Based Industries Consortium

Available from: 2024-02-27 Created: 2024-02-27 Last updated: 2025-09-23Bibliographically approved
Österberg, K., Bogestål, Y., Jenndahl, L., Gustafsson-Hedberg, T., Synnergren, J., Holmgren, G., . . . Håkansson, J. (2023). Personalized tissue-engineered veins - long term safety, functionality and cellular transcriptome analysis in large animals. Biomaterials Science, 11(11), 3860-3877
Open this publication in new window or tab >>Personalized tissue-engineered veins - long term safety, functionality and cellular transcriptome analysis in large animals
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2023 (English)In: Biomaterials Science, ISSN 2047-4830, E-ISSN 2047-4849, Vol. 11, no 11, p. 3860-3877Article in journal (Refereed) Published
Abstract [en]

Tissue engineering is a promising methodology to produce advanced therapy medicinal products (ATMPs). We have developed personalized tissue engineered veins (P-TEV) as an alternative to autologous or synthetic vascular grafts utilized in reconstructive vein surgery. Our hypothesis is that individualization through reconditioning of a decellularized allogenic graft with autologous blood will prime the tissue for efficient recellularization, protect the graft from thrombosis, and decrease the risk of rejection. In this study, P-TEVs were transplanted to vena cava in pig, and the analysis of three veins after six months, six veins after 12 months and one vein after 14 months showed that all P-TEVs were fully patent, and the tissue was well recellularized and revascularized. To confirm that the ATMP product had the expected characteristics one year after transplantation, gene expression profiling of cells from P-TEV and native vena cava were analyzed and compared by qPCR and sequencing. The qPCR and bioinformatics analysis confirmed that the cells from the P-TEV were highly similar to the native cells, and we therefore conclude that P-TEV is functional and safe in large animals and have high potential for use as a clinical transplant graft.

Place, publisher, year, edition, pages
NLM (Medline), 2023
Keywords
animal, endothelium cell, gene expression profiling, pig, procedures, tissue engineering, transplantation, vein, Animals, Endothelial Cells, Swine, Veins
National Category
Cell and Molecular Biology
Identifiers
urn:nbn:se:ri:diva-65415 (URN)10.1039/d2bm02011d (DOI)2-s2.0-85160870522 (Scopus ID)
Note

This study was supported by Vinnova project CAMP (contract no. 2017-02130), a common call by VINNOVA and Vetenskapsrådet: Biologcal pharmaseuticals (Dnr 2017-02983),by University of Skövde under grants from the Swedish Knowledge Foundation [#2016-0330, #2020-0014] and Västra Götalandsregionen (consultant check).

Available from: 2023-06-15 Created: 2023-06-15 Last updated: 2025-09-23Bibliographically approved
Jenndahl, L., Österberg, K., Bogestål, Y., Simsa, R., Gustafsson-Hedberg, T., Stenlund, P., . . . Håkansson, J. (2022). Personalized tissue-engineered arteries as vascular graft transplants: A safety study in sheep. Regenerative Therapy, 21, 331-341
Open this publication in new window or tab >>Personalized tissue-engineered arteries as vascular graft transplants: A safety study in sheep
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2022 (English)In: Regenerative Therapy, ISSN 2352-3204, Vol. 21, p. 331-341Article in journal (Refereed) Published
Abstract [en]

Patients with cardiovascular disease often need replacement or bypass of a diseased blood vessel. With disadvantages of both autologous blood vessels and synthetic grafts, tissue engineering is emerging as a promising alternative of advanced therapy medicinal products for individualized blood vessels. By reconditioning of a decellularized blood vessel with the recipient's own peripheral blood, we have been able to prevent rejection without using immunosuppressants and prime grafts for efficient recellularization in vivo. Recently, decellularized veins reconditioned with autologous peripheral blood were shown to be safe and functional in a porcine in vivo study as a potential alternative for vein grafting. In this study, personalized tissue engineered arteries (P-TEA) were developed using the same methodology and evaluated for safety in a sheep in vivo model of carotid artery transplantation. Five personalized arteries were transplanted to carotid arteries and analyzed for safety and patency as well as with histology after four months in vivo. All grafts were fully patent without any occlusion or stenosis. The tissue was well cellularized with a continuous endothelial cell layer covering the luminal surface, revascularized adventitia with capillaries and no sign of rejection or infection. In summary, the results indicate that P-TEA is safe to use and has potential as clinical grafts. 

Place, publisher, year, edition, pages
Japanese Society of Regenerative Medicine, 2022
Keywords
ATMP, Blood vessels, Recellularization, Regenerative medicine, Scaffold, Tissue engineering, amoxicillin, attane, buprenorphine, carprofen, clopidogrel, dalteparin, dexmedetomidine, heparin, isoflurane, norocarp, poliglecaprone, promea, propofol, receptor type tyrosine protein phosphatase C, vetergesic, vetrimoxin, adventitia, anatomical concepts, angiography, animal experiment, animal model, animal tissue, antibiotic prophylaxis, arterial stiffness, artery anastomosis, artery transplantation, Article, biomechanics, biopsy technique, blood flow, blood vessel graft, blood vessel parameters, blood vessel wall, burst pressure, capillary, carotid artery transplantation, confocal laser scanning microscopy, controlled study, decellularization, decellularized blood vessel, device safety, DNA extraction, end to end anastomosis, endothelial cell layer, evening dosage, extracellular matrix, failure strain, female, fluorescence microscopy, full luminal endothelialization, histology, hyperplasia, immunohistochemistry, intimal hyperplasia, luminal surface, medical procedures, morning dosage, nonhuman, reconditioning of vascular graft, revascularization, scanning electron microscopy
National Category
Clinical Medicine
Identifiers
urn:nbn:se:ri:diva-60256 (URN)10.1016/j.reth.2022.08.005 (DOI)2-s2.0-85137671619 (Scopus ID)
Note

Funding details: Horizon 2020 Framework Programme, H2020; Funding details: H2020 Marie Skłodowska-Curie Actions, MSCA, 722779; Funding details: VINNOVA, Dnr 2017-01413, Dnr 2017–02983; Funding text 1: We want to acknowledge the staff at the Department of Experimental Biomedicine at Gothenburg University. This study was partly performed by funding from VINNOVA (Dnr 2017–02983 and Dnr 2017-01413) and Region Västra Götalandsregionen (consultant check) as well as from the European Union's Horizon 2020 research and innovation program under the Marie Skłodowska-Curie grant agreement No 722779 conducted within the “Training 4 Cell Regenerative Medicine” (T4CRM) network. The company VERIGRAFT AB holds a patent on peripheral whole blood perfusion of decellularized tissues and did also finance the project.; Funding text 2: We want to acknowledge the staff at the Department of Experimental Biomedicine at Gothenburg University. This study was partly performed by funding from VINNOVA ( Dnr 2017–02983 and Dnr 2017-01413 ) and Region Västra Götalandsregionen (consultant check) as well as from the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie grant agreement No 722779 conducted within the “Training 4 Cell Regenerative Medicine” (T4CRM) network. The company VERIGRAFT AB holds a patent on peripheral whole blood perfusion of decellularized tissues and did also finance the project.

Available from: 2022-10-10 Created: 2022-10-10 Last updated: 2025-09-23Bibliographically approved
Forsberg, S., Olsson, V., Bredie, W., Verstraelen, E., Krona, A. & Wendin, K. (2022). Proposal of development of finger foods for older adults with motoric eating difficulties -a study based on creative design. International Journal of Gastronomy and Food Science, 28, Article ID 100516.
Open this publication in new window or tab >>Proposal of development of finger foods for older adults with motoric eating difficulties -a study based on creative design
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2022 (English)In: International Journal of Gastronomy and Food Science, ISSN 1878-450X, E-ISSN 1878-4518, Vol. 28, article id 100516Article in journal (Refereed) Published
Abstract [en]

The purpose of this study was to develop and evaluate finger food components as part of a complete meal for older adults with major motoric eating difficulties. Overall, the evaluation of sensory characteristics as well as texture analysis forms a valuable basis for further development of a meal that can be eaten without cutlery, comprising flatbread, beef rolls and brown sauce. The nutritionally enriched flatbreads were generally perceived as neutral in odour and flavour, while higher concentrations of protein and fat influenced the texture negatively. Although bread was not commonly eaten with a meal, the consumer evaluation stressed the importance of texture of flatbreads intended for wrapping. Differences between meat cuts were not pronounced; however, beef rolls made from inner thigh were perceived as more tender and crumblier than beef rolls made from outer thigh. Moreover, the odour and flavour intensity were thought to be higher in beef rolls braised in rolls due to the caramelised surface. However, tenderness was considered the most important parameter for beef rolls whereas crumbliness and dryness in tender meat can be compensated for by serving the meat with sauce. In fact, sauce was found to play an important role in a well-accepted meal. The addition of sweet, sour, or bitter tastes to brown sauces, to investigate the effect of basic tastes, reduced the perceived intensity of the original flavour profile of the brown sauces. Finally, combinations of the developed meal components could be investigated further to create attractive finger food meals for those unable to eat with knife and fork. © 2022 The Authors

Place, publisher, year, edition, pages
AZTI-Tecnalia, 2022
Keywords
Creative design, Finger foods, Motoric eating difficulties, Older adults, Product development, Sensory evaluation
National Category
Educational Sciences
Identifiers
urn:nbn:se:ri:diva-58996 (URN)10.1016/j.ijgfs.2022.100516 (DOI)2-s2.0-85127346113 (Scopus ID)
Note

Funding details: 20180029; Funding text 1: The study is part of the project “Finger foods -A vehicle to prevent malnutrition, maintaining physical and social health as well as quality of life among older adults” funded by The Kamprad Family Foundation for Entrepreneurship, Research and Charity, Sweden. Reference number: 20180029 .

Available from: 2022-05-25 Created: 2022-05-25 Last updated: 2025-09-23Bibliographically approved
Schettino, R., Verni, M., Acin‐albiac, M., Vincentini, O., Krona, A., Knaapila, A., . . . Coda, R. (2021). Bioprocessed brewers’ spent grain improves nutritional and antioxidant properties of pasta. Antioxidants, 10(5), Article ID 742.
Open this publication in new window or tab >>Bioprocessed brewers’ spent grain improves nutritional and antioxidant properties of pasta
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2021 (English)In: Antioxidants, ISSN 2076-3921, Vol. 10, no 5, article id 742Article in journal (Refereed) Published
Abstract [en]

Brewers’ spent grain (BSG), the by‐product of brewing, was subjected to a xylanase treatment followed by fermentation with Lactiplantibacillus plantarum PU1. Bioprocessed BSG has been used as ingredient to obtain a fortified semolina pasta which can be labeled as “high fiber” and “source of protein” according to the European Community Regulation No. 1924/2006. Compared to native BSG, the use of bioprocessed BSG led to higher protein digestibility and quality indices (es-sential amino acid index, biological value, protein efficiency ratio, nutritional index), as well as lower predicted glycemic index. Bioprocessing also improved the technological properties of fortified pasta. Indeed, brightfield and confocal laser scanning microscopy revealed the formation of a more homogeneous protein network, resulting from the degradation of the arabinoxylan structure of BSG, and the release of the components entrapped into the cellular compartments. The extensive cell wall disruption contributed to the release of phenols, and conferred enhanced antioxidant activity to the fortified pasta. The persistence of the activity was demonstrated after in vitro‐mimicked digestion, evaluating the protective effects of the digested pasta towards induced oxidative stress in Caco‐2 cells cultures. The fortified pasta showed a peculiar sensory profile, markedly improved by the pre‐treatment, thus confirming the great potential of bioprocessed BSG as health‐promoting food ingredient. © 2021 by the authors.

Place, publisher, year, edition, pages
MDPI AG, 2021
Keywords
Antioxidant activity, Brewers’ spent grain, Enzymes, Fiber, Lactic acid bacteria, Nutritional values, Pasta, Sensory analysis
National Category
Food Science
Identifiers
urn:nbn:se:ri:diva-53183 (URN)10.3390/antiox10050742 (DOI)2-s2.0-85105365191 (Scopus ID)
Note

Funding details: Svenska Forskningsrådet Formas; Funding details: Ministero dell’Istruzione, dell’Università e della Ricerca, MIUR; Funding text 1: Funding: This transnational project is part of the ERA‐Net SUSFOOD2 with funding provided by national/ regional sources [FORMAS, Sweden; MMM, Ministry of Agriculture and Forestry of Finland; MIUR, Ministero Italiano dell’Università e della Ricerca] and co‐funding by the European Union´s Horizon 2020 research and innovation programme.

Available from: 2021-05-26 Created: 2021-05-26 Last updated: 2025-09-23Bibliographically approved
Wåhlstrand Skärström, V., Krona, A., Loren, N. & Röding, M. (2021). DeepFRAP: Fast fluorescence recovery after photobleaching data analysis using deep neural networks. Journal of Microscopy, 282(2), 146-161
Open this publication in new window or tab >>DeepFRAP: Fast fluorescence recovery after photobleaching data analysis using deep neural networks
2021 (English)In: Journal of Microscopy, ISSN 0022-2720, E-ISSN 1365-2818, Vol. 282, no 2, p. 146-161Article in journal (Refereed) Published
Abstract [en]

Conventional analysis of fluorescence recovery after photobleaching (FRAP) data for diffusion coefficient estimation typically involves fitting an analytical or numerical FRAP model to the recovery curve data using non-linear least squares. Depending on the model, this can be time consuming, especially for batch analysis of large numbers of data sets and if multiple initial guesses for the parameter vector are used to ensure convergence. In this work, we develop a completely new approach, DeepFRAP, utilizing machine learning for parameter estimation in FRAP. From a numerical FRAP model developed in previous work, we generate a very large set of simulated recovery curve data with realistic noise levels. The data are used for training different deep neural network regression models for prediction of several parameters, most importantly the diffusion coefficient. The neural networks are extremely fast and can estimate the parameters orders of magnitude faster than least squares. The performance of the neural network estimation framework is compared to conventional least squares estimation on simulated data, and found to be strikingly similar. Also, a simple experimental validation is performed, demonstrating excellent agreement between the two methods. We make the data and code used publicly available to facilitate further development of machine learning-based estimation in FRAP. Lay description: Fluorescence recovery after photobleaching (FRAP) is one of the most frequently used methods for microscopy-based diffusion measurements and broadly used in materials science, pharmaceutics, food science and cell biology. In a FRAP experiment, a laser is used to photobleach fluorescent particles in a region. By analysing the recovery of the fluorescence intensity due to the diffusion of still fluorescent particles, the diffusion coefficient and other parameters can be estimated. Typically, a confocal laser scanning microscope (CLSM) is used to image the time evolution of the recovery, and a model is fit using least squares to obtain parameter estimates. In this work, we introduce a new, fast and accurate method for analysis of data from FRAP. The new method is based on using artificial neural networks to predict parameter values, such as the diffusion coefficient, effectively circumventing classical least squares fitting. This leads to a dramatic speed-up, especially noticeable when analysing large numbers of FRAP data sets, while still producing results in excellent agreement with least squares. Further, the neural network estimates can be used as very good initial guesses for least squares estimation in order to make the least squares optimization convergence much faster than it otherwise would. This provides for obtaining, for example, diffusion coefficients as soon as possible, spending minimal time on data analysis. In this fashion, the proposed method facilitates efficient use of the experimentalist's time which is the main motivation to our approach. The concept is demonstrated on pure diffusion. However, the concept can easily be extended to the diffusion and binding case. The concept is likely to be useful in all application areas of FRAP, including diffusion in cells, gels and solutions. © 2020 The Authors. 

Place, publisher, year, edition, pages
Blackwell Publishing Ltd, 2021
Keywords
confocal laser scanning microscopy, deep learning, deep neural network, diffusion, fluorescence recovery after photobleaching, machine learning, regression
National Category
Natural Sciences
Identifiers
urn:nbn:se:ri:diva-52079 (URN)10.1111/jmi.12989 (DOI)2-s2.0-85099352468 (Scopus ID)
Note

Funding details: 2019‐01295; Funding details: Vetenskapsrådet, VR, 2016‐03809; Funding details: Stiftelsen för Strategisk Forskning, SSF; Funding text 1: The financial support of the Swedish Research Council for Sustainable Development (grant number 2019‐01295), the Swedish Research Council (grant number 2016‐03809), and the Swedish Foundation for Strategic Research (the project ‘Material structures seen through microscopes and statistics') is acknowledged. The computations were in part performed on resources at Chalmers Centre for Computational Science and Engineering (C3SE) provided by the Swedish National Infrastructure for Computing (SNIC). A GPU used for part of this research was donated by the NVIDIA Corporation.

Available from: 2021-01-26 Created: 2021-01-26 Last updated: 2025-09-23Bibliographically approved
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ORCID iD: ORCID iD iconorcid.org/0000-0002-3356-0894

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