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  • 1.
    Aurell, Erik
    et al.
    RISE, Swedish ICT, SICS.
    Brown, Stanley
    Johansson, Johan
    Stability puzzles in phage lambda2002In: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics: Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, ISSN 1063-651X, E-ISSN 1095-3787, Physical Review E, Vol. 65Article in journal (Refereed)
    Abstract [en]

    In the absence of RecA-mediated cleavage of the repressor, the [lambda] prophage is exceptionally stable. We develop a stochastic model that predicts the stability of such epigenetic states from affinities of the molecular components. We find that the stability, in particular, depends on the maximum possible cI protein production, and on the number of cro proteins per transcribed mRNA. We apply the model to the behavior of recently published mutants of OR and find, in particular, that a mutant that overexpress cro behaves in a different way than what was predicted, thus suggesting that the current view of the OR switch is incomplete. The approach described here should be generally applicable to the stability of expressed states.

  • 2.
    Röding, Magnus
    RISE - Research Institutes of Sweden, Bioscience and Materials, Agrifood and Bioscience.
    Effective diffusivity in lattices of impermeable superballs2018In: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics: Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, ISSN 1063-651X, E-ISSN 1095-3787, Vol. 98, no 5, article id 052908Article in journal (Refereed)
    Abstract [en]

    Granular materials constitute a broad class of two-phase media with discrete, solid par-ticles i.e. granules surrounded by a continuous void phase. They have properties that arekey for e.g. separation and chromatography columns, cathode materials for batteries, andpharmaceutical coatings for controlled release. Controlling mass transport properties suchas effective diffusivity is crucial for these applications and the subject of targeted designand optimization. The prototypical granule is a sphere, but current manufacturingtechniques allow for more complicated shapes to be produced in a highly controlled manner,including ellipsoids, cubes, and cubes with rounded edges and corners. The impactof shape for self-assembly, phase transitions, crystallization, and random close packing hasalso been studied for these shapes

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