In this study, lap joints between AA5754 and DP1000 ultra-high strength steels were produced by friction stir welding. In order to investigate the roles of zinc on intermetallic phase formation and joint properties, steel substrates were used, two being galvanised coated and one uncoated. Joint performance has been evaluated in term of maximum tensile shear loading. The effects of the process parameter, translational speed; chemical compositions; and intermetallic phase formation on the mechanical properties have been investigated. The results show that joints with a galvanised layer exhibit higher strength as compared to the non-coated steel. A thicker galvanised layer promotes the presence of zinc in the aluminium matrix, resulting in better joint properties. The level of zinc contents in the aluminium matrix depends on process temperature and material circulation characteristics. Two stable Al-rich intermetallic phases, Al5Fe2 and Al13Fe4, were detected at the interface regardless of the coating conditions.