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Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds
University of the Balearic Islands, Spain; University of Gothenburg, Sweden.ORCID-id: 0000-0003-0173-560X
Universidad Tecnológica Metropolitana, Chile.
Universidad Tecnológica Metropolitana, Chile; Center of Applied Ecology and Sustainability, Chile.
University of the Balearic Islands, Spain; University of Gothenburg, Sweden.
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2023 (engelsk)Inngår i: Frontiers in Microbiology, E-ISSN 1664-302X, Vol. 14, artikkel-id 1159176Artikkel i tidsskrift (Fagfellevurdert) Published
Abstract [en]

Stutzerimonas balearica (Pseudomonas balearica) has been found principally in oil-polluted environments. The capability of S. balearica to thrive from the degradation of pollutant compounds makes it a species of interest for potential bioremediation applications. However, little has been reported about the diversity of S. balearica. In this study, genome sequences of S. balearica strains from different origins were analyzed, revealing that it is a diverse species with an open pan-genome that will continue revealing new genes and functionalities as the genomes of more strains are sequenced. The nucleotide signatures and intra- and inter-species variation of the 16S rRNA genes of S. balearica were reevaluated. A strategy of screening 16S rRNA gene sequences in public databases enabled the detection of 158 additional strains, of which only 23% were described as S. balearica. The species was detected from a wide range of environments, although mostly from aquatic and polluted environments, predominantly related to petroleum oil. Genomic and phenotypic analyses confirmed that S. balearica possesses varied inherent capabilities for aromatic compounds degradation. This study increases the knowledge of the biology and diversity of S. balearica and will serve as a basis for future work with the species.

sted, utgiver, år, opplag, sider
2023. Vol. 14, artikkel-id 1159176
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Identifikatorer
URN: urn:nbn:se:ri:diva-67517DOI: 10.3389/fmicb.2023.1159176OAI: oai:DiVA.org:ri-67517DiVA, id: diva2:1803671
Merknad

his work was supported by the Spanish MINECO through projects CGL2009-12180 and Consolider CSD2009-00006, as well as funds for competitive research groups from the Government of the Balearic Islands (the last two funds with FEDER co-funding). The DNA sequencing and analytical work was funded, in part, by the CCUG Project: Genomics and Proteomics Research on Bacterial Diversity. The CCUG is supported by the Department of Clinical Microbiology, Sahlgrenska University Hospital and the Sahlgrenska Academy of the University of Gothenburg, Sweden. DP-P and RD acknowledge the support of the FONDECYT 1201741, FONDECYT 11220354, and ANID-PIA/BASAL FB0002 grants of the Chilean government, and the LE19-05 project supported by the Fund of Scientific and Technological Equipment, year 2019, Universidad Tecnológica Metropolitana.

Tilgjengelig fra: 2023-10-10 Laget: 2023-10-10 Sist oppdatert: 2024-01-17bibliografisk kontrollert

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